Joseph D. Yesselman : rechercher sur Z-Library

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1

Assessing the quality of absolute hydration free energies among CHARMM-compatible ligand parameterization schemes

Knight, Jennifer L., Yesselman, Joseph D., Brooks, Charles L.

Journal:

Journal of Computational Chemistry

Année:

2013

Langue:

english

Fichier:

PDF, 754 KB

english, 2013

2

High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding

Denny, Sarah Knight, Bisaria, Namita, Yesselman, Joseph David, Das, Rhiju, Herschlag, Daniel, Greenleaf, William James

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 9.33 MB

english, 2018

3

MATCH: An atom-typing toolset for molecular mechanics force fields

Joseph D. Yesselman, Daniel J. Price, Jennifer L. Knight, Charles L. Brooks III

Journal:

Journal of Computational Chemistry

Année:

2012

Langue:

english

Fichier:

PDF, 857 KB

english, 2012

4

Predicting extreme pKa shifts in staphylococcal nuclease mutants with constant pH molecular dynamics

Evan J. Arthur, Joseph D. Yesselman, Charles L. Brooks III

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 340 KB

english, 2011

5

Exploring RNA Drug Binding Using Consistent Charge Models

Yesselman, Joseph D., Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 34 KB

english, 2011

6

Conservation and Functional Importance of Carbon–Oxygen Hydrogen Bonding in AdoMet-Dependent Methyltransferases

Horowitz, Scott, Dirk, Lynnette M.A., Yesselman, Joseph D., Nimtz, Jennifer S., Adhikari, Upendra, Mehl, Ryan A., Scheiner, Steve, Houtz, Robert L., Al-Hashimi, Hashim M., Trievel, Raymond C.

Journal:

Journal of the American Chemical Society

Année:

2013

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2013

7

Primerize: automated primer assembly for transcribing non-coding RNA domains

Tian, Siqi, Yesselman, Joseph D., Cordero, Pablo, Das, Rhiju

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2015

8

RNA-Redesign: a web server for fixed-backbone 3D design of RNA: Figure 1.

Yesselman, Joseph D., Das, Rhiju

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2015

9

High Throughput Characterization of RNA Tertiary Elements

Denny, Sarah, Bisaria, Namita, Yesselman, Joseph, Das, Rhiju, Herschlag, Daniel, Greenleaf, William

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 41 KB

english, 2016

10

Frequent side chain methyl carbon-oxygen hydrogen bonding in proteins revealed by computational and stereochemical analysis of neutron structures

Yesselman, Joseph D., Horowitz, Scott, Brooks, Charles L., Trievel, Raymond C.

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 330 KB

english, 2015

11

Structural conservation in the template/pseudoknot domain of vertebrate telomerase RNA from teleost fish to human

Wang, Yaqiang, Yesselman, Joseph D., Zhang, Qi, Kang, Mijeong, Feigon, Juli

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2016

12

RNA structure inference through chemical mapping after accidental or intentional mutations

Cheng, Clarence Y., Kladwang, Wipapat, Yesselman, Joseph D., Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2017

13

Updates to the RNA mapping database (RMDB), version 2

Yesselman, Joseph D, Tian, Siqi, Liu, Xin, Shi, Lei, Li, Jin Billy, Das, Rhiju

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2018

14

Computational design of three-dimensional RNA structure and function

Yesselman, Joseph D., Eiler, Daniel, Carlson, Erik D., Gotrik, Michael R., d’Aquino, Anne E., Ooms, Alexandra N., Kladwang, Wipapat, Carlson, Paul D., Shi, Xuesong, Costantino, David A., Herschlag, Da

Journal:

Nature Nanotechnology

Année:

2019

Fichier:

PDF, 3.08 MB

2019

15

Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation

Yesselman, Joseph D., Denny, Sarah K., Bisaria, Namita, Herschlag, Daniel, Greenleaf, William J., Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Année:

2019

Fichier:

PDF, 12.89 MB

2019

16

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Kappel, Kalli, Zhang, Kaiming, Su, Zhaoming, Watkins, Andrew M., Kladwang, Wipapat, Li, Shanshan, Pintilie, Grigore, Topkar, Ved V., Rangan, Ramya, Zheludev, Ivan N., Yesselman, Joseph D., Chiu, Wah,

Journal:

Année:

2020

Fichier:

PDF, 11.87 MB

2020

17

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

Shi, Honglue, Rangadurai, Atul, Abou Assi, Hala, Roy, Rohit, Case, David A., Herschlag, Daniel, Yesselman, Joseph D., Al-Hashimi, Hashim M.

Journal:

Nature Communications

Année:

2020

Fichier:

PDF, 2.87 MB

2020